PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0034s0076.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family C2H2
Protein Properties Length: 394aa    MW: 44587.8 Da    PI: 8.7307
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0034s0076.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.50.00045524221
                         EETTTTEEESSHHHHHHHHH CS
              zf-C2H2  2 kCpdCgksFsrksnLkrHir 21
                          C++C+++F ++s + +H  
  Mapoly0034s0076.1.p  5 ICEKCSRRFETSSAYSQHCA 24
                         5*****************86 PP

2zf-C2H214.40.0001181100120
                          EEETTTTEEESSHHHHHHHH CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                          ++C+ Cg  F +  nL+ H+
  Mapoly0034s0076.1.p  81 FVCEECGVDFETLANLRAHQ 100
                          89*****************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.3427IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.787432IPR007087Zinc finger, C2H2
PROSITE patternPS000280627IPR007087Zinc finger, C2H2
SMARTSM003553.13458IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803658IPR007087Zinc finger, C2H2
SMARTSM003551481108IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.66E-581137No hitNo description
PROSITE profilePS501579.84781109IPR007087Zinc finger, C2H2
SMARTSM003554.3118141IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280120141IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.90.228.107.1E-40143349IPR012317Poly(ADP-ribose) polymerase, catalytic domain
SuperFamilySSF563995.56E-30143353No hitNo description
PfamPF006447.8E-12157321IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MVMIICEKCS RRFETSSAYS QHCADSHKVE PQRLKCIYGC ERLFRDVEAM NKHKEAKHAE  60
GVDEFVQTTT TVIPPQKVLQ FVCEECGVDF ETLANLRAHQ VDRQDGEHIR ISNEVGSKKC  120
ESCDKVFDCE DSLEQHFVSN HAVIQLPPTE KRRISVERKF FNQWKKGTTV DITVQSVFKI  180
YNSAWRAARY AKYRSEIEAN SRGQGDILGN EHQLFHGTSL ACELGSPSQG AKLCNLNNCN  240
MCSILRRGFK LAKAATNKWQ RYGRGIYTTP TSGKSDDYIP AASERRAVFV CKVLTGKQYR  300
TKTNYLGLTS PPQGFDSVWG EPGVNLNYDE VVVYNSRAIL PSYIIVYTKH SSHQPQRSRA  360
SSIFLEAEGV NLGVRRVQAF CCIVILIRIS LFR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6611439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27240.11e-29C2H2 family protein